diff --git a/API-Reference-Document.md b/API-Reference-Document.md
new file mode 100644
index 0000000..ac3b4d8
--- /dev/null
+++ b/API-Reference-Document.md
@@ -0,0 +1,476 @@
+# Loxide
+## API Reference Document
+
+**Version 1.0 | December 2025**
+
+---
+
+## 1. Overview
+
+This document provides a complete reference for the AirlockAPIWrapper class and all Airlock API endpoints used by Loxide.
+
+### 1.1 Authentication
+
+All API requests require an API key passed via the X-APIKey header:
+
+```
+Headers: { "X-APIKey": "your-api-key-here" }
+```
+
+### 1.2 Base URL
+
+The base URL is configured in `system_config.json` and typically follows the pattern:
+
+```
+https://airlock.example.com/api
+```
+
+---
+
+## 2. Agent Management
+
+### 2.1 agent_find_all()
+
+Retrieve all registered agents.
+
+**Endpoint:** `POST /v1/agent/find`  
+**Payload:** `{}`  
+**Returns:** DataFrame with agent records
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `hostname` | str | Device hostname |
+| `agentid` | str | Unique identifier |
+| `clientversion` | str | Agent version |
+| `groupid` | str | Policy group ID |
+| `status` | int | 0=Offline, 1=Online, 2=Hidden, 3=Safemode |
+| `lastcheckin` | str | Last check-in timestamp |
+| `ip` | str | External IP address |
+| `localip` | str | Internal IP address |
+| `domain` | str | Network domain |
+| `os` | str | Operating system |
+| `username` | str | Logged-in user |
+| `freespace` | int | Available disk space |
+| `policyversion` | str | Active policy version |
+
+### 2.2 agent_find_by_hostname(hostname: str)
+
+Find agents matching a hostname pattern.
+
+**Endpoint:** `POST /v1/agent/find`  
+**Payload:** `{ "hostname": "<pattern>" }`  
+**Returns:** DataFrame with matching agents
+
+### 2.3 agent_find_by_id(agentid: str)
+
+Find agent by unique ID.
+
+**Endpoint:** `POST /v1/agent/find`  
+**Payload:** `{ "agentid": "<id>" }`  
+**Returns:** DataFrame with agent record
+
+### 2.4 agent_find_by_status(status: int)
+
+Find agents by status code.
+
+**Endpoint:** `POST /v1/agent/find`  
+**Payload:** `{ "status": <code> }`  
+**Status Codes:**
+- `0` - Offline
+- `1` - Online
+- `2` - Hidden
+- `3` - Safemode
+
+### 2.5 agent_move(agentid: str, groupid: str)
+
+Move an agent to a different policy group.
+
+**Endpoint:** `POST /v1/agent/move`  
+**Payload:** `{ "agentid": "<id>", "groupid": "<target_group>" }`  
+**Returns:** dict with operation result
+
+### 2.6 agents_find_by_group(groupid: str)
+
+Find all agents in a policy group.
+
+**Endpoint:** `POST /v1/agent/find`  
+**Payload:** `{ "groupid": "<id>" }`  
+**Returns:** DataFrame with agents
+
+---
+
+## 3. Policy Management
+
+### 3.1 policy_find_all()
+
+Retrieve all policy groups.
+
+**Endpoint:** `POST /v1/group`  
+**Payload:** `{}`  
+**Returns:** DataFrame with policy records
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `name` | str | Policy display name |
+| `groupid` | int | Unique group identifier |
+| `hidden` | bool | Visibility flag |
+| `parent` | str | Parent policy name (if child) |
+
+### 3.2 policy_set_auditmode(groupid: str, auditmode: str)
+
+Toggle policy between audit and enforcement modes.
+
+**Endpoint:** `POST /v1/group/settings/auditmode`  
+**Payload:** `{ "groupid": "<id>", "auditmode": "<mode>" }`  
+**Mode Values:**
+- `"1"` - Audit mode (log only)
+- `"0"` - Enforcement mode (block)
+
+### 3.3 policy_list_agents(groupid: str)
+
+List all agents assigned to a policy group.
+
+**Endpoint:** `POST /v1/group/agents`  
+**Payload:** `{ "groupid": "<id>" }`  
+**Returns:** DataFrame with agents
+
+### 3.4 policy_list_allowlists(groupid: str)
+
+List allowlists assigned to a policy group.
+
+**Endpoint:** `POST /v1/group/policies`  
+**Payload:** `{ "groupid": "<id>" }`  
+**Returns:** DataFrame with applications
+
+### 3.5 policy_clone(source_groupid: str, target_groupid: str)
+
+Clone a policy from one group to another.
+
+**Endpoint:** `POST /v1/group/assign`  
+**Payload:** `{ "groupid": "<source>", "targetgroupid": "<target>" }`
+
+### 3.6 policy_add_path_exclusions(groupid: str, paths: List[str])
+
+Add path exclusions to a policy group.
+
+**Endpoint:** `POST /v1/group/path/add`  
+**Payload:** `{ "groupid": "<id>", "path": ["<path1>", "<path2>"] }`
+
+### 3.7 policy_add_publishers(groupid: str, publishers: List[str])
+
+Add trusted publishers to a policy group.
+
+**Endpoint:** `POST /v1/group/publisher/add`  
+**Payload:** `{ "groupid": "<id>", "publisher": ["<pub1>", "<pub2>"] }`
+
+---
+
+## 4. OTP Management
+
+### 4.1 otp_generate(agentid: str, duration: int, purpose: str)
+
+Generate a new One-Time Password for an agent.
+
+**Endpoint:** `POST /v1/otp/retrieve`  
+**Payload:**
+```json
+{
+  "agentid": "<id>",
+  "duration": "<minutes>",
+  "purpose": "<description>"
+}
+```
+**Returns:** str - The generated OTP code
+
+### 4.2 otp_find_active()
+
+Retrieve all active OTP sessions.
+
+**Endpoint:** `POST /v1/otp/usage`  
+**Payload:** `{ "status": "1" }`  
+**Returns:** DataFrame with OTP records
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `otpid` | str | OTP session identifier |
+| `agentid` | str | Associated agent ID |
+| `hostname` | str | Agent hostname |
+| `purpose` | str | OTP purpose description |
+| `granted` | str | Grant timestamp |
+| `expires` | str | Expiration timestamp |
+
+### 4.3 otp_find_awaiting()
+
+Retrieve OTPs awaiting activation.
+
+**Endpoint:** `POST /v1/otp/usage`  
+**Payload:** `{ "status": "0" }`
+
+### 4.4 otp_find_enforced()
+
+Retrieve enforced OTPs.
+
+**Endpoint:** `POST /v1/otp/usage`  
+**Payload:** `{ "status": "2" }`
+
+### 4.5 otp_find_revoked()
+
+Retrieve revoked OTPs.
+
+**Endpoint:** `POST /v1/otp/usage`  
+**Payload:** `{ "status": "3" }`
+
+### 4.6 otp_find_by_agent(agentid: str)
+
+Retrieve OTPs for a specific agent.
+
+**Endpoint:** `POST /v1/otp/usage`  
+**Payload:** `{ "agentid": "<id>" }`
+
+### 4.7 otp_revoke(otpid: str)
+
+Revoke an active OTP session.
+
+**Endpoint:** `POST /v1/otp/revoke`  
+**Payload:** `{ "otpid": "<id>" }`  
+**Returns:** dict with operation result
+
+### 4.8 otp_validate(otpcode: str)
+
+Validate an OTP code.
+
+**Endpoint:** `POST /v1/otp/validate`  
+**Payload:** `{ "otpcode": "<code>" }`  
+**Returns:** dict indicating validity
+
+### 4.9 otp_get_activities(otpid: str)
+
+Retrieve activity log for a specific OTP.
+
+**Endpoint:** `POST /v1/otp/activities`  
+**Payload:** `{ "otpid": "<id>" }`  
+**Returns:** DataFrame with OTP activities
+
+---
+
+## 5. Execution History
+
+### 5.1 history_execution(today: str, date_selected: str, agent_name: str)
+
+Retrieve execution history for a specific agent.
+
+**Endpoint:** `POST /v1/getexechistory`  
+**Payload:**
+```json
+{
+  "datefrom": "<YYYY-MM-DD>",
+  "dateto": "<YYYY-MM-DD>",
+  "hostname": "<name>"
+}
+```
+**Returns:** List[Dict] with execution records
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `type` | int | Execution type code |
+| `hostname` | str | Device hostname |
+| `username` | str | User who executed |
+| `filename` | str | Executed filename |
+| `sha256` | str | File hash |
+| `publisher` | str | Code signer |
+| `datetime` | str | Execution timestamp |
+| `policyname` | str | Active policy |
+| `policyver` | str | Policy version |
+| `commandline` | str | Full command line |
+| `pprocess` | str | Parent process |
+
+### 5.2 Execution Type Codes
+
+| Code | Description |
+|------|-------------|
+| 0 | Trusted Execution |
+| 1 | Blocked Execution |
+| 2 | Untrusted Execution [Audit] |
+| 3 | Untrusted Execution [OTP] |
+| 4 | Trusted Path Execution |
+| 5 | Trusted Publisher Execution |
+| 6 | Blocklist Execution |
+| 7 | Blocklist Execution [Audit] |
+| 8 | Trusted Process Execution |
+| 9 | Constrained Execution |
+| 10 | Trusted Metadata Execution |
+| 11 | Trusted Browser Execution |
+| 12 | Blocked Browser Execution |
+| 13 | Untrusted Browser Execution [Audit] |
+| 14 | Untrusted Browser Execution [OTP] |
+| 15 | Blocklist Browser Execution [Audit] |
+| 16 | Blocklist Browser Execution |
+| 17 | Trusted Installer Execution |
+| 18 | Trusted Browser Metadata Execution |
+
+### 5.3 history_logging(type: List[str], checkpoint: str, policy: Optional[List[str]])
+
+Retrieve execution history logs with pagination.
+
+**Endpoint:** `POST /v1/logging/exechistories`  
+**Payload:**
+```json
+{
+  "type": ["1", "2", "3"],
+  "checkpoint": "<checkpoint_id>",
+  "policy": ["<policy_name>"]
+}
+```
+**Returns:** str with execution histories
+
+---
+
+## 6. Server Logs
+
+### 6.1 server_logs(checkpoint: Optional[str])
+
+Retrieve server activity logs.
+
+**Endpoint:** `POST /v1/logging/svractivities`  
+**Payload:** `{}` or `{ "checkpoint": "<last_checkpoint>" }`  
+**Returns:** str with server activities
+
+The checkpoint parameter enables pagination for large result sets. Pass the last checkpoint from a previous call to get subsequent records.
+
+---
+
+## 7. Allowlist and Blocklist Management
+
+### 7.1 allowlist_find_all()
+
+Retrieve all allowlist applications.
+
+**Endpoint:** `POST /v1/application`  
+**Payload:** `{}`  
+**Returns:** DataFrame with application records
+
+### 7.2 allowlist_export(applicationid: str)
+
+Export allowlist as XML.
+
+**Endpoint:** `POST /v1/application/export`  
+**Payload:** `{ "applicationid": "<id>" }`  
+**Returns:** bytes - XML content
+
+### 7.3 baseline_find_all()
+
+Retrieve all baselines.
+
+**Endpoint:** `POST /v1/baseline`  
+**Payload:** `{}`  
+**Returns:** DataFrame with baseline records
+
+### 7.4 baseline_export(baselineid: str)
+
+Export baseline as XML.
+
+**Endpoint:** `POST /v1/baseline/export`  
+**Payload:** `{ "baselineid": "<id>" }`  
+**Returns:** bytes - XML content
+
+### 7.5 blocklist_find_all()
+
+Retrieve all blocklists.
+
+**Endpoint:** `POST /v1/blocklist`  
+**Payload:** `{}`  
+**Returns:** DataFrame with blocklist records
+
+### 7.6 blocklist_export(blocklistid: str)
+
+Export blocklist as XML.
+
+**Endpoint:** `POST /v1/blocklist/export`  
+**Payload:** `{ "blocklistid": "<id>" }`  
+**Returns:** bytes - XML content
+
+### 7.7 hash_add_to_allowlist(applicationid: str, hashes: List[str])
+
+Add hashes to an allowlist.
+
+**Endpoint:** `POST /v1/hash/application/add`  
+**Payload:** `{ "applicationid": "<id>", "hashes": ["<sha256>", ...] }`  
+**Returns:** dict with operation result
+
+### 7.8 hash_query(hashes: List[str])
+
+Query information about specific hashes.
+
+**Endpoint:** `POST /v1/hash/query`  
+**Payload:** `{ "hashes": ["<sha256>", ...] }`  
+**Returns:** DataFrame with hash records
+
+| Field | Type | Description |
+|-------|------|-------------|
+| `sha256` | str | Hash value |
+| `filename` | str | Associated filename |
+| `publisher` | str | Code signer (or "Not Signed") |
+| `reputation` | dict | VirusTotal scan results |
+| `applications` | str | Associated allowlists |
+| `baselines` | str | Associated baselines |
+| `blocklists` | str | Associated blocklists |
+
+---
+
+## 8. Rust Backend (airlock_libs)
+
+The `airlock_libs` package provides Rust-accelerated functions for performance-critical operations.
+
+### 8.1 pull_policy_exec_histories(api, type, days, policy_name)
+
+Pull execution history for policies with optimized performance.
+
+| Parameter | Type | Description |
+|-----------|------|-------------|
+| `api` | AirlockAPIWrapper | API wrapper instance |
+| `type` | str | JSON list of exec types, e.g., "[1,2,3]" |
+| `days` | int | Days to look back |
+| `policy_name` | Optional[str] | Specific policy or None for all |
+
+**Returns:** JSON string with execution history
+
+### 8.2 history_logging(api, exec_types, checkpoint_number, policy_names)
+
+Query execution logs with pagination support.
+
+| Parameter | Type | Description |
+|-----------|------|-------------|
+| `api` | AirlockAPIWrapper | API wrapper instance |
+| `exec_types` | str | JSON list of exec types, e.g., "[3,5,8]" |
+| `checkpoint_number` | str | Checkpoint ID for pagination |
+| `policy_names` | Optional[str] | Comma-separated policy names or None |
+
+**Returns:** List[Dict] - Execution history records
+
+---
+
+## 9. Error Handling
+
+All API methods may raise:
+
+- `requests.exceptions.RequestException` - Network or HTTP errors
+- `ValueError` - Invalid response format
+- `KeyError` - Missing expected fields in response
+
+Recommended pattern:
+
+```python
+try:
+    result = api.agent_find_all()
+except requests.exceptions.RequestException as e:
+    logger.error(f"API request failed: {e}")
+    # Handle error appropriately
+```
+
+---
+
+## 10. License
+
+Copyright (C) 2025 James Brotosky, Brandon Wickline
+
+GNU Affero General Public License v3.0